diff --git a/servers/fpga_server_lin/src/fpga_conn.cpp b/servers/fpga_server_lin/src/fpga_conn.cpp
index 6ab85a2..f83d384 100644
--- a/servers/fpga_server_lin/src/fpga_conn.cpp
+++ b/servers/fpga_server_lin/src/fpga_conn.cpp
@@ -175,6 +175,13 @@ void FPGASocket::finishKerberosHandshake() {
 			return;
 		}
 
+		// If enabled, reset user FPGA to known good state
+		m_config->setGroup("Programming");
+		TQString resetScript = m_config->readEntry("userresetscript");
+		if (resetScript != "") {
+			system(resetScript.ascii());
+		}
+
 		TQDataStream ds(this);
 		ds.setPrintableData(true);
 		ds << TQString("OK");
@@ -474,6 +481,14 @@ FPGAServer::FPGAServer(TQObject* parent, int port, KSimpleConfig* config) :
 		exit(1);
 	}
 
+	// If enabled, setup control FPGA
+	m_config->setGroup("Programming");
+	TQString setupControlFPGAScript = m_config->readEntry("controlstartupscript");
+	if (setupControlFPGAScript != "") {
+		printf("[INFO] Setting up control FPGA\n\r"); fflush(stdout);
+		system(setupControlFPGAScript.ascii());
+	}
+
 	printf("[INFO] Server started on port %d\n\r", port); fflush(stdout);
 }