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tellico/xslt/pubmed2tellico.xsl

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5.4 KiB

<?xml version="1.0"?>
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
xmlns="http://periapsis.org/tellico/"
xmlns:m="uri:months"
version="1.0">
<!--
===================================================================
Tellico XSLT file - used for importing PubMed data.
Copyright (C) 2005 Michaël Zugaro <michael.zugaro@college-de-france.fr>
2005-2006 Robby Stephenson <robby@periapsis.org>
This XSLT stylesheet is designed to be used with the 'Tellico'
application, which can be found at http://www.periapsis.org/tellico/
===================================================================
-->
<!-- lookup table for months -->
<m:months>
<m:month id="Jan">1</m:month>
<m:month id="Feb">2</m:month>
<m:month id="Mar">3</m:month>
<m:month id="Apr">4</m:month>
<m:month id="May">5</m:month>
<m:month id="Jun">6</m:month>
<m:month id="Jul">7</m:month>
<m:month id="Aug">8</m:month>
<m:month id="Sep">9</m:month>
<m:month id="Oct">10</m:month>
<m:month id="Nov">11</m:month>
<m:month id="Dec">12</m:month>
<!-- months in other languages could be added easily -->
</m:months>
<xsl:key name="months" match="m:month" use="@id"/>
<xsl:variable name="months-top" select="document('')/*/m:months"/>
<xsl:output method="xml" version="1.0" encoding="UTF-8" indent="yes"
doctype-public="-//Robby Stephenson/DTD Tellico V10.0//EN"
doctype-system="http://periapsis.org/tellico/dtd/v10/tellico.dtd"/>
<xsl:template match="/">
<tellico syntaxVersion="10">
<collection title="PubMed Import" type="5">
<fields>
<field name="_default"/>
<field flags="0" title="Institution" category="Institution" format="4" type="2" name="institution" i18n="true">
<prop name="bibtex">institution</prop>
</field>
<field flags="0" title="Pubmed" category="Publishing" format="4" type="1" name="pmid" description="Pubmed" i18n="true" />
</fields>
<xsl:apply-templates select="/PubmedArticleSet/PubmedArticle"/>
</collection>
</tellico>
</xsl:template>
<xsl:template match="PubmedArticle">
<entry>
<xsl:apply-templates select="MedlineCitation"/>
<xsl:apply-templates select="PubmedData"/>
</entry>
</xsl:template>
<xsl:template match="MedlineCitation">
<entry-type>
<xsl:text>article</xsl:text>
</entry-type>
<volume>
<xsl:value-of select="Article/Journal/JournalIssue/Volume"/>
</volume>
<number>
<xsl:value-of select="Article/Journal/JournalIssue/Issue"/>
</number>
<xsl:variable name="year">
<xsl:variable name="year1" select="Article/Journal/JournalIssue/PubDate/Year"/>
<xsl:variable name="year2" select="Article/Journal/JournalIssue/PubDate/MedlineDate"/>
<xsl:choose>
<xsl:when test="string-length($year1) != 0">
<xsl:value-of select="$year1"/>
</xsl:when>
<xsl:otherwise>
<xsl:value-of select="substring($year2,1,4)"/>
</xsl:otherwise>
</xsl:choose>
</xsl:variable>
<year>
<xsl:value-of select="$year"/>
</year>
<month>
<xsl:apply-templates select="$months-top">
<xsl:with-param name="month-id" select="Article/Journal/JournalIssue/PubDate/Month"/>
</xsl:apply-templates>
</month>
<title>
<xsl:value-of select="Article/ArticleTitle"/>
</title>
<pages>
<xsl:value-of select="Article/Pagination/MedlinePgn"/>
</pages>
<abstract>
<xsl:value-of select="Article/Abstract/AbstractText"/>
</abstract>
<institution>
<xsl:value-of select="Article/Affiliation"/>
</institution>
<authors>
<xsl:for-each select="Article/AuthorList/Author">
<author>
<xsl:choose>
<xsl:when test="ForeName">
<xsl:value-of select="concat(ForeName, ' ')"/>
</xsl:when>
<xsl:when test="FirstName">
<xsl:value-of select="concat(FirstName, ' ')"/>
</xsl:when>
<xsl:otherwise>
<xsl:call-template name="TransformInitials">
<xsl:with-param name="initials" select="Initials"/>
</xsl:call-template>
</xsl:otherwise>
</xsl:choose>
<xsl:value-of select="LastName"/>
</author>
</xsl:for-each>
</authors>
<journal>
<xsl:if test="Article/Journal/Title">
<xsl:value-of select="Article/Journal/Title"/>
</xsl:if>
<xsl:if test="not(Article/Journal/Title)">
<xsl:value-of select="MedlineJournalInfo/MedlineTA"/>
</xsl:if>
</journal>
<keywords>
<xsl:for-each select="MeshHeadingList/MeshHeading/QualifierName[@MajorTopicYN='Y'] | MeshHeadingList/MeshHeading/DescriptorName">
<keyword>
<xsl:value-of select="."/>
</keyword>
</xsl:for-each>
</keywords>
<pmid>
<xsl:value-of select="PMID"/>
</pmid>
</xsl:template>
<xsl:template match="PubmedData">
<doi>
<xsl:value-of select="ArticleIdList/ArticleId[@IdType='doi']"/>
</doi>
</xsl:template>
<xsl:template name="TransformInitials">
<xsl:param name="initials"/>
<xsl:variable name="n" select="string-length($initials)"/>
<xsl:if test="$n &gt;= 1">
<xsl:value-of select="substring($initials,1,1)"/>
<xsl:text>. </xsl:text>
<xsl:call-template name="TransformInitials">
<xsl:with-param name="initials" select="substring($initials,2,$n - 1)"/>
</xsl:call-template>
</xsl:if>
</xsl:template>
<xsl:template match="m:months">
<xsl:param name="month-id"/>
<xsl:variable name="m" select="key('months', $month-id)"/>
<xsl:if test="$m">
<xsl:value-of select="$m"/>
</xsl:if>
<xsl:if test="not($m)">
<xsl:value-of select="$month-id"/>
</xsl:if>
</xsl:template>
</xsl:stylesheet>